PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140851.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 287aa    MW: 30830.3 Da    PI: 7.7985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068118140123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++Fs+   L  H  +H
  XP_009140851.1 118 YECKTCSRTFSSFQALGGHRASH 140
                     99**********99999998887 PP

2zf-C2H213.30.00024194216123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009140851.1 194 HECSICGSEFTSGQALGGHMRRH 216
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-12117142IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8117140No hitNo description
PROSITE profilePS5015710.575118145IPR007087Zinc finger, C2H2
SMARTSM003550.13118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8189216No hitNo description
Gene3DG3DSA:3.30.160.600.001192216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11193217IPR007087Zinc finger, C2H2
SMARTSM003550.019194216IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868194221IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMSQDHVGSD QTQIIKGKRT KRQRSSSSTF LVAAAAATTN TSSSSSAGDG GGGRAVSDEY  60
NSAVSSPVTT TDCTEEEEDM AICLIMLARG AALSPDLKNS RKADKTLSSA ENSSFFVYEC  120
KTCSRTFSSF QALGGHRASH KKPRVSIEAK TKLPLMQAKS SGSEEGQKSN FKVFGSSLAS  180
LSSNIIISKA NKVHECSICG SEFTSGQALG GHMRRHRTAT TAVIPVSTTE VSRNSTEEET  240
ENLSSYIEQR KYLPLDLNLP APEDDLRESK FQGIVFSTTP ALIDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058512e-41AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBankAC0062022e-41AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBankAK1754932e-41AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
GenBankAK2298122e-41AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBankCP0026852e-41CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankX986782e-41X98678.1 A.thaliana mRNA for ZAT5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140851.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X41e-148ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0D3C2I60.0A0A0D3C2I6_BRAOL; Uncharacterized protein
STRINGBra034396.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-111C2H2 family protein